IL_4WCE_044

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4WCE|1|X|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_044 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.102

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4WCE|1|X|C|1246
4WCE|1|X|G|1247
4WCE|1|X|U|1248
4WCE|1|X|U|1249
4WCE|1|X|G|1250
4WCE|1|X|A|1251
4WCE|1|X|A|1252
4WCE|1|X|G|1253
*
4WCE|1|X|U|1272
4WCE|1|X|G|1273
4WCE|1|X|G|1274
4WCE|1|X|A|1275
4WCE|1|X|G|1276

Current chains

Chain X

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L20