IL_4WCE_074

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

AGGAGU*ACGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_074 not in the Motif Atlas

Geometric match to IL_8CRE_028

Geometric discrepancy: 0.3916

The information below is about IL_8CRE_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WCE|1|X|A|1883
4WCE|1|X|G|1884
4WCE|1|X|G|1885
4WCE|1|X|A|1886
4WCE|1|X|G|1887
4WCE|1|X|U|1888
*
4WCE|1|X|A|1908
4WCE|1|X|C|1909
4WCE|1|X|G|1910
4WCE|1|X|A|1911
4WCE|1|X|A|1912
4WCE|1|X|U|1913

Current chains

Chain X

23S rRNA

Nearby chains