IL_4WCE_078

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

4WCE|1|X|A|1965, 4WCE|1|X|U|1971, 4WCE|1|X|C|1990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_078 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.0824

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

4WCE|1|X|C|1961
4WCE|1|X|G|1962
4WCE|1|X|A|1963
4WCE|1|X|A|1964
4WCE|1|X|A|1965
4WCE|1|X|U|1966
4WCE|1|X|U|1967
4WCE|1|X|C|1968
4WCE|1|X|C|1969
4WCE|1|X|U|1970
4WCE|1|X|U|1971
4WCE|1|X|G|1972
*
4WCE|1|X|C|1988
4WCE|1|X|C|1989
4WCE|1|X|C|1990
4WCE|1|X|G|1991

Current chains

Chain X

23S rRNA

Nearby chains