IL_4WCE_086

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

AUUC*GGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_086 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2699

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4WCE|1|X|A|2123
4WCE|1|X|U|2124
4WCE|1|X|U|2125
4WCE|1|X|C|2126
*
4WCE|1|X|G|2217
4WCE|1|X|G|2218
4WCE|1|X|C|2219
4WCE|1|X|U|2220

Current chains

Chain X

23S rRNA

Nearby chains