IL_4WF1_023

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.2285

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4WF1|1|AA|G|450
4WF1|1|AA|A|451
4WF1|1|AA|A|452
4WF1|1|AA|G|453
4WF1|1|AA|G|454
4WF1|1|AA|G|455
*
4WF1|1|AA|C|477
4WF1|1|AA|A|478
4WF1|1|AA|U|479
4WF1|1|AA|U|480
4WF1|1|AA|G|481
4WF1|1|AA|A|482
4WF1|1|AA|C|483

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16