IL_4WF1_084

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4WF1|1|BA|G|801, 4WF1|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_084 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0484

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WF1|1|BA|G|674
4WF1|1|BA|A|675
4WF1|1|BA|A|676
4WF1|1|BA|A|677
4WF1|1|BA|C|678
*
4WF1|1|BA|G|799
4WF1|1|BA|A|800
4WF1|1|BA|G|801
4WF1|1|BA|A|802
4WF1|1|BA|U|803
4WF1|1|BA|A|804
4WF1|1|BA|G|805
4WF1|1|BA|C|806

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15