IL_4WF1_154

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

4WF1|1|BA|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_154 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.2988

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4WF1|1|BA|G|2124
4WF1|1|BA|G|2125
4WF1|1|BA|A|2126
4WF1|1|BA|G|2127
4WF1|1|BA|G|2128
*
4WF1|1|BA|C|2160
4WF1|1|BA|C|2161
4WF1|1|BA|G|2162
4WF1|1|BA|A|2163
4WF1|1|BA|C|2164
4WF1|1|BA|C|2165
4WF1|1|BA|U|2166
4WF1|1|BA|U|2167
4WF1|1|BA|G|2168
4WF1|1|BA|A|2169
4WF1|1|BA|A|2170
4WF1|1|BA|A|2171
4WF1|1|BA|U|2172
4WF1|1|BA|A|2173
4WF1|1|BA|C|2174

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1