IL_4WF1_229

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

UGGUC*GACCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGGUC,GACCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_229 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3861

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4WF1|1|CA|U|986
4WF1|1|CA|G|987
4WF1|1|CA|G|988
4WF1|1|CA|U|989
4WF1|1|CA|C|990
*
4WF1|1|CA|G|1215
4WF1|1|CA|A|1216
4WF1|1|CA|C|1217
4WF1|1|CA|C|1218
4WF1|1|CA|A|1219

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CN

30S ribosomal protein S14

Chain CS

30S ribosomal protein S19