IL_4WF1_261

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GUGU*ACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUGU,ACAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_261 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.3307

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4WF1|1|DA|G|134
4WF1|1|DA|U|135
4WF1|1|DA|G|136
4WF1|1|DA|U|137
*
4WF1|1|DA|A|142
4WF1|1|DA|C|143
4WF1|1|DA|A|144
4WF1|1|DA|C|145

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23