IL_4WF1_297

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4WF1|1|DA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_297 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.1003

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4WF1|1|DA|G|1031
4WF1|1|DA|A|1032
4WF1|1|DA|U|1033
4WF1|1|DA|G|1034
*
4WF1|1|DA|C|1121
4WF1|1|DA|G|1122
4WF1|1|DA|C|1123

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DM

50S ribosomal protein L16