IL_4WF1_336

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4WF1|1|DA|A|1938, 4WF1|1|DA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_336 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.1362

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4WF1|1|DA|C|1934
4WF1|1|DA|G|1935
4WF1|1|DA|A|1936
4WF1|1|DA|A|1937
4WF1|1|DA|A|1938
4WF1|1|DA|U|1939
4WF1|1|DA|U|1940
4WF1|1|DA|C|1941
4WF1|1|DA|C|1942
4WF1|1|DA|U|1943
4WF1|1|DA|U|1944
4WF1|1|DA|G|1945
*
4WF1|1|DA|C|1961
4WF1|1|DA|C|1962
4WF1|1|DA|U|1963
4WF1|1|DA|G|1964

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2