IL_4WF1_363
3D structure
- PDB id
- 4WF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to negamycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.09 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WF1_363 not in the Motif Atlas
- Geometric match to IL_5J7L_346
- Geometric discrepancy: 0.0832
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WF1|1|DA|C|2652
4WF1|1|DA|U|2653
4WF1|1|DA|A|2654
4WF1|1|DA|G|2655
4WF1|1|DA|U|2656
4WF1|1|DA|A|2657
4WF1|1|DA|C|2658
*
4WF1|1|DA|G|2663
4WF1|1|DA|G|2664
4WF1|1|DA|A|2665
4WF1|1|DA|C|2666
4WF1|1|DA|C|2667
4WF1|1|DA|G|2668
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DG
- 50S ribosomal protein L6
Coloring options: