IL_4WF1_398

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CGGAUUGG*CCAUGAAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_398 not in the Motif Atlas

Geometric match to IL_4WF9_119

Geometric discrepancy: 0.3679

The information below is about IL_4WF9_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00087.1

Basepair signature

cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

4WF1|1|CA|C|1303
4WF1|1|CA|G|1304
4WF1|1|CA|G|1305
4WF1|1|CA|A|1306
4WF1|1|CA|U|1307
4WF1|1|CA|U|1308
4WF1|1|CA|G|1309
4WF1|1|CA|G|1310
*
4WF1|1|CA|C|1327
4WF1|1|CA|C|1328
4WF1|1|CA|A|1329
4WF1|1|CA|U|1330
4WF1|1|CA|G|1331
4WF1|1|CA|A|1332
4WF1|1|CA|A|1333
4WF1|1|CA|G|1334

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CS

30S ribosomal protein S19