Motif IL_93502.4 Version IL_93502.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-15 | 3-14 | 4-13 | 5-12 | 6-11 | 7-10 | 8-9 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9H3G_010 | 9H3G | 0.2824 | 1 | 9x8 Sarcin-Ricin; G-bulge | A | LSU rRNA | G | 94 | C | 95 | G | 96 | A | 97 | A | 98 | C | 99 | C | 100 | G | 101 | * | C | 80 | U | 81 | U | 82 | A | 83 | U | 85 | A | 86 | A | 87 | C | 88 | cWW | cWW | tSH | tHW | tHH | tHS | cWW | |
| 2 | IL_4WF9_008 | 4WF9 | 0.2448 | 1 | 9x8 Sarcin-Ricin; G-bulge | X | LSU rRNA | G | 190 | A | 191 | G | 192 | A | 193 | A | 194 | C | 195 | U | 196 | G | 197 | * | C | 204 | U | 205 | U | 206 | A | 207 | U | 209 | A | 210 | C | 211 | C | 212 | cWW | cWWa | tSH | tHW | tHH | tHS | cWw | cWW |
| 3 | IL_8GLP_005 | 8GLP | 0.1800 | 1 | 9x8 Sarcin-Ricin; G-bulge | L5 | LSU rRNA | C | 30 | U | 31 | G | 32 | A | 33 | A | 34 | U | 35 | U | 36 | U | 37 | * | A | 44 | U | 45 | U | 46 | A | 47 | U | 49 | C | 50 | A | 51 | G | 52 | cWW | tHW | tHH | cWw | cWW | |||
| 4 | IL_8OI5_005 | 8OI5 | 0.0481 | 1 | tSH-tHW-tHH-tHS | 1 | LSU rRNA | C | 30 | U | 31 | G | 32 | A | 33 | A | 34 | C | 35 | U | 36 | U | 37 | * | A | 44 | U | 45 | C | 46 | A | 47 | U | 49 | A | 50 | A | 51 | G | 52 | cWW | tSH | tHW | tHH | tHS | cWw | cWW | |
| 5 | IL_9PN5_004 | 9PN5 | 0.0348 | 1 | tSH-tHW-tHH-tHS | A1 | LSU rRNA | C | 31 | U | 32 | G | 33 | A | 34 | A | 35 | C | 36 | U | 37 | U | 38 | * | A | 45 | U | 46 | C | 47 | A | 48 | U | 50 | A | 51 | A | 52 | G | 53 | cWW | tSH | tHW | tHH | tHS | cWw | cWW | |
| 6 | IL_9SUM_004 | 9SUM | 0.0323 | 1 | tSH-tHW-tHH-tHS (H) | A | LSU rRNA | C | 29 | U | 30 | G | 31 | A | 32 | A | 33 | C | 34 | U | 35 | U | 36 | * | A | 43 | U | 44 | C | 45 | A | 46 | U | 48 | A | 49 | A | 50 | G | 51 | cWW | tSH | tHW | tHH | tHS | cWw | cWW | |
| 7 | IL_9AXU_004 | 9AXU | 0.0000 | 1 | tSH-tHW-tHH-tHS | 2 | LSU rRNA | C | 31 | U | 32 | G | 33 | A | 34 | A | 35 | C | 36 | U | 37 | U | 38 | * | A | 45 | U | 46 | C | 47 | A | 48 | U | 50 | A | 51 | A | 52 | G | 53 | cWW | tSH | tHW | tHH | tHS | cWw | cWW | |
| 8 | IL_9H3G_009 | 9H3G | 0.0511 | 1 | tSH-tHW-tHH-tHS | A | LSU rRNA | C | 29 | U | 30 | G | 31 | A | 32 | G | 33 | PSU | 34 | U | 35 | U | 36 | * | A | 43 | OMU | 44 | C | 45 | A | 46 | OMU | 48 | A | 49 | A | 50 | G | 51 | cWW | tSH | tHW | ntHH | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAACUU*AUCAAUAAG | 4 |
| GCGAACCG*CUUAGUAAC | 1 |
| GAGAACUG*CUUAGUACC | 1 |
| CUGAAUUU*AUUAGUCAG | 1 |
| CUGAG(PSU)UU*A(OMU)CAA(OMU)AAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAACU*UCAAUAA | 4 |
| CGAACC*UUAGUAA | 1 |
| AGAACU*UUAGUAC | 1 |
| UGAAUU*UUAGUCA | 1 |
| UGAG(PSU)U*(OMU)CAA(OMU)AA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW-tHH-tHS (4)
- 9x8 Sarcin-Ricin; G-bulge (3)
- tSH-tHW-tHH-tHS (H) (1)
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.15 | Max 0.29
Coloring options: