IL_4WFA_004

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

4WFA|1|X|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_004 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.0886

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

4WFA|1|X|G|81
4WFA|1|X|G|82
4WFA|1|X|G|83
4WFA|1|X|A|84
4WFA|1|X|G|85
*
4WFA|1|X|C|97
4WFA|1|X|U|98
4WFA|1|X|U|99
4WFA|1|X|U|100
4WFA|1|X|G|101
4WFA|1|X|A|102
4WFA|1|X|U|103
4WFA|1|X|C|104

Current chains

Chain X

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L24

Chain V

50S ribosomal protein L29