IL_4WFA_018

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UUAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_018 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.0724

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WFA|1|X|U|649
4WFA|1|X|U|650
4WFA|1|X|A|651
4WFA|1|X|A|652
4WFA|1|X|G|653
*
4WFA|1|X|U|663
4WFA|1|X|G|664
4WFA|1|X|G|665
4WFA|1|X|A|666
4WFA|1|X|G|667

Current chains

Chain X

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15