IL_4WFA_027

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UGAUG*UUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_027 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.1334

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

4WFA|1|X|U|889
4WFA|1|X|G|890
4WFA|1|X|A|891
4WFA|1|X|U|892
4WFA|1|X|G|893
*
4WFA|1|X|U|975
4WFA|1|X|U|976
4WFA|1|X|A|977
4WFA|1|X|A|978

Current chains

Chain X

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L30