IL_4WFA_043

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GUCC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_043 not in the Motif Atlas

Homologous match to IL_7A0S_040

Geometric discrepancy: 0.3659

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4WFA|1|X|G|1211
4WFA|1|X|U|1212
4WFA|1|X|C|1213
4WFA|1|X|C|1214
*
4WFA|1|X|G|1218
4WFA|1|X|G|1219
4WFA|1|X|A|1220
4WFA|1|X|C|1221

Current chains

Chain X

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L21