IL_4WFA_082

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CCU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_082 not in the Motif Atlas

Homologous match to IL_4WF9_083

Geometric discrepancy: 0.1077

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4WFA|1|X|C|2111
4WFA|1|X|C|2112
4WFA|1|X|U|2113
*
4WFA|1|X|A|2260
4WFA|1|X|A|2261
4WFA|1|X|G|2262

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28