IL_4WFA_083

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CGCA*UGG

Length

7 nucleotides

Bulged bases

4WFA|1|X|G|2230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_083 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.3436

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4WFA|1|X|C|2229
4WFA|1|X|G|2230
4WFA|1|X|C|2231
4WFA|1|X|A|2232
*
4WFA|1|X|U|2246
4WFA|1|X|G|2247
4WFA|1|X|G|2248

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2