IL_4WFA_104

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

4WFA|1|X|A|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFA_104 not in the Motif Atlas

Homologous match to IL_4WF9_104

Geometric discrepancy: 0.0482

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4WFA|1|X|G|2764
4WFA|1|X|A|2765
4WFA|1|X|U|2766
4WFA|1|X|A|2767
4WFA|1|X|A|2768
4WFA|1|X|G|2769
*
4WFA|1|X|U|2789
4WFA|1|X|G|2790
4WFA|1|X|A|2791
4WFA|1|X|A|2792
4WFA|1|X|G|2793
4WFA|1|X|C|2794

Current chains

Chain X

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13