IL_4WFB_013

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GCAC*GAGUGAAAUAGAAC

Length

18 nucleotides

Bulged bases

4WFB|1|X|U|549, 4WFB|1|X|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_013 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.0445

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

4WFB|1|X|G|527
4WFB|1|X|C|528
4WFB|1|X|A|529
4WFB|1|X|C|530
*
4WFB|1|X|G|541
4WFB|1|X|A|542
4WFB|1|X|G|543
4WFB|1|X|U|544
4WFB|1|X|G|545
4WFB|1|X|A|546
4WFB|1|X|A|547
4WFB|1|X|A|548
4WFB|1|X|U|549
4WFB|1|X|A|550
4WFB|1|X|G|551
4WFB|1|X|A|552
4WFB|1|X|A|553
4WFB|1|X|C|554

Current chains

Chain X

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24