IL_4WFB_014

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_014 not in the Motif Atlas

Homologous match to IL_4WF9_016

Geometric discrepancy: 0.0722

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

4WFB|1|X|A|581
4WFB|1|X|G|582
4WFB|1|X|A|583
4WFB|1|X|G|584
*
4WFB|1|X|U|597
4WFB|1|X|G|598
4WFB|1|X|A|599
4WFB|1|X|U|600

Current chains

Chain X

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20