IL_4WFB_024

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GCG*CAAUC

Length

8 nucleotides

Bulged bases

4WFB|1|X|C|821, 4WFB|1|X|A|833, 4WFB|1|X|A|834, 4WFB|1|X|U|835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_024 not in the Motif Atlas

Homologous match to IL_4WF9_027

Geometric discrepancy: 0.1128

The information below is about IL_4WF9_027

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

4WFB|1|X|G|820
4WFB|1|X|C|821
4WFB|1|X|G|822
*
4WFB|1|X|C|832
4WFB|1|X|A|833
4WFB|1|X|A|834
4WFB|1|X|U|835
4WFB|1|X|C|836

Current chains

Chain X

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22