IL_4WFB_081

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

ACC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_081 not in the Motif Atlas

Geometric match to IL_4WF9_055

Geometric discrepancy: 0.1908

The information below is about IL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4WFB|1|X|A|2232
4WFB|1|X|C|2233
4WFB|1|X|C|2234
*
4WFB|1|X|G|2244
4WFB|1|X|G|2245
4WFB|1|X|U|2246

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28