IL_4WFB_084

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

4WFB|1|X|U|2429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_084 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.2331

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

4WFB|1|X|U|2428
4WFB|1|X|U|2429
4WFB|1|X|C|2430
*
4WFB|1|X|G|2441
4WFB|1|X|G|2442

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15