IL_4WFB_100

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

4WFB|1|X|A|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_100 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.1215

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4WFB|1|X|G|2764
4WFB|1|X|A|2765
4WFB|1|X|U|2766
4WFB|1|X|A|2767
4WFB|1|X|A|2768
4WFB|1|X|G|2769
*
4WFB|1|X|U|2789
4WFB|1|X|G|2790
4WFB|1|X|A|2791
4WFB|1|X|A|2792
4WFB|1|X|G|2793
4WFB|1|X|C|2794

Current chains

Chain X

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13