IL_4WFB_101

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GUGC*GCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_101 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.2283

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4WFB|1|X|G|2769
4WFB|1|X|U|2770
4WFB|1|X|G|2771
4WFB|1|X|C|2772
*
4WFB|1|X|G|2786
4WFB|1|X|C|2787
4WFB|1|X|A|2788
4WFB|1|X|U|2789

Current chains

Chain X

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6