IL_4WFB_106

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GUGA*UGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WFB_106 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.107

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4WFB|1|Y|G|5
4WFB|1|Y|U|6
4WFB|1|Y|G|7
4WFB|1|Y|A|8
*
4WFB|1|Y|U|107
4WFB|1|Y|G|108
4WFB|1|Y|C|109
4WFB|1|Y|C|110

Current chains

Chain Y

5S rRNA

Nearby chains

Chain L

50S ribosomal protein L18