IL_4WOI_013

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4WOI|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_013 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1006

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4WOI|1|AA|G|147
4WOI|1|AA|G|148
4WOI|1|AA|A|149
4WOI|1|AA|U|150
4WOI|1|AA|A|151
4WOI|1|AA|A|152
4WOI|1|AA|C|153
*
4WOI|1|AA|G|168
4WOI|1|AA|C|169
4WOI|1|AA|U|170
4WOI|1|AA|A|171
4WOI|1|AA|A|172
4WOI|1|AA|U|173
4WOI|1|AA|A|174
4WOI|1|AA|C|175

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20