IL_4WOI_016

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4WOI|1|AA|U|244, 4WOI|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_016 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0872

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4WOI|1|AA|G|242
4WOI|1|AA|A|243
4WOI|1|AA|U|244
4WOI|1|AA|U|245
4WOI|1|AA|A|246
4WOI|1|AA|G|247
*
4WOI|1|AA|C|277
4WOI|1|AA|G|278
4WOI|1|AA|A|279
4WOI|1|AA|C|280
4WOI|1|AA|G|281
4WOI|1|AA|A|282
4WOI|1|AA|U|283
4WOI|1|AA|C|284

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17