IL_4WOI_058

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_058 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.1499

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4WOI|1|AA|G|1242
4WOI|1|AA|C|1243
4WOI|1|AA|G|1244
*
4WOI|1|AA|C|1293
4WOI|1|AA|G|1294
4WOI|1|AA|U|1295

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AM

30S ribosomal protein S13