IL_4WOI_087

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4WOI|1|BA|G|801, 4WOI|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_087 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0708

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WOI|1|BA|G|674
4WOI|1|BA|A|675
4WOI|1|BA|A|676
4WOI|1|BA|A|677
4WOI|1|BA|C|678
*
4WOI|1|BA|G|799
4WOI|1|BA|A|800
4WOI|1|BA|G|801
4WOI|1|BA|A|802
4WOI|1|BA|U|803
4WOI|1|BA|A|804
4WOI|1|BA|G|805
4WOI|1|BA|C|806

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15