3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
4WOI|1|BA|C|1838
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WOI_141 not in the Motif Atlas
Homologous match to IL_7RQB_071
Geometric discrepancy: 0.1213
The information below is about IL_7RQB_071
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_88739.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

4WOI|1|BA|C|1837
4WOI|1|BA|C|1838
4WOI|1|BA|G|1839
4WOI|1|BA|G|1840
*
4WOI|1|BA|C|1902
4WOI|1|BA|G|1903

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BC
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2966 s