IL_4WOI_168

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_168 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0797

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WOI|1|BA|C|2652
4WOI|1|BA|U|2653
4WOI|1|BA|A|2654
4WOI|1|BA|G|2655
4WOI|1|BA|U|2656
4WOI|1|BA|A|2657
4WOI|1|BA|C|2658
*
4WOI|1|BA|G|2663
4WOI|1|BA|G|2664
4WOI|1|BA|A|2665
4WOI|1|BA|C|2666
4WOI|1|BA|C|2667
4WOI|1|BA|G|2668

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain BK

50S ribosomal protein L14