IL_4WOI_178

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_178 not in the Motif Atlas

Homologous match to IL_5J7L_356

Geometric discrepancy: 0.0865

The information below is about IL_5J7L_356

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.4

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4WOI|1|BB|G|3023
4WOI|1|BB|G|3024
4WOI|1|BB|U|3025
4WOI|1|BB|C|3026
4WOI|1|BB|C|3027
4WOI|1|BB|C|3028
*
4WOI|1|BB|G|3056
4WOI|1|BB|A|3057
4WOI|1|BB|A|3058
4WOI|1|BB|A|3059
4WOI|1|BB|C|3060

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L5

Chain BO

50S ribosomal protein L18