IL_4WOI_181

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_181 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.0638

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WOI|1|BB|C|3071
4WOI|1|BB|G|3072
4WOI|1|BB|A|3073
4WOI|1|BB|U|3074
4WOI|1|BB|G|3075
4WOI|1|BB|G|3076
4WOI|1|BB|U|3077
4WOI|1|BB|A|3078
4WOI|1|BB|G|3079
*
4WOI|1|BB|C|3097
4WOI|1|BB|G|3098
4WOI|1|BB|A|3099
4WOI|1|BB|G|3100
4WOI|1|BB|A|3101
4WOI|1|BB|G|3102
4WOI|1|BB|U|3103
4WOI|1|BB|A|3104
4WOI|1|BB|G|3105

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BM

50S ribosomal protein L16

Chain BV

50S ribosomal protein L25