IL_4WOI_191

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_191 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.0853

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4WOI|1|CA|U|293
4WOI|1|CA|A|294
4WOI|1|CA|G|295
*
4WOI|1|CA|C|343
4WOI|1|CA|A|344
4WOI|1|CA|A|345
4WOI|1|CA|A|346
4WOI|1|CA|A|347

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CU

50S ribosomal protein L24