IL_4WOI_195

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_195 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.0815

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4WOI|1|CA|U|606
4WOI|1|CA|U|607
4WOI|1|CA|A|608
4WOI|1|CA|A|609
4WOI|1|CA|C|610
*
4WOI|1|CA|G|618
4WOI|1|CA|G|619
4WOI|1|CA|G|620
4WOI|1|CA|A|621
4WOI|1|CA|G|622

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CL

50S ribosomal protein L15