IL_4WOI_202

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4WOI|1|CA|G|776, 4WOI|1|CA|A|788, 4WOI|1|CA|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_202 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0907

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4WOI|1|CA|G|775
4WOI|1|CA|G|776
4WOI|1|CA|G|777
*
4WOI|1|CA|C|787
4WOI|1|CA|A|788
4WOI|1|CA|A|789
4WOI|1|CA|U|790
4WOI|1|CA|C|791

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2

Chain CS

50S ribosomal protein L22