IL_4WOI_204

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_204 not in the Motif Atlas

Geometric match to IL_5J7L_267

Geometric discrepancy: 0.2372

The information below is about IL_5J7L_267

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4WOI|1|CA|A|844
4WOI|1|CA|A|845
4WOI|1|CA|U|846
4WOI|1|CA|U|847
*
4WOI|1|CA|A|933
4WOI|1|CA|U|934

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CZ

50S ribosomal protein L30