IL_4WOI_234

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUACU*GGUAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_234 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3024

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4WOI|1|CA|U|1411
4WOI|1|CA|U|1412
4WOI|1|CA|A|1413
4WOI|1|CA|C|1414
4WOI|1|CA|U|1415
*
4WOI|1|CA|G|1587
4WOI|1|CA|G|1588
4WOI|1|CA|U|1589
4WOI|1|CA|A|1590
4WOI|1|CA|A|1591

Current chains

Chain CA

23S ribosomal RNA

Nearby chains