IL_4WOI_251

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_251 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.3439

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4WOI|1|CA|U|1720
4WOI|1|CA|G|1721
4WOI|1|CA|A|1722
4WOI|1|CA|G|1723
4WOI|1|CA|G|1724
*
4WOI|1|CA|U|1736
4WOI|1|CA|G|1737
4WOI|1|CA|G|1738
4WOI|1|CA|A|1739
4WOI|1|CA|G|1740

Current chains

Chain CA

23S ribosomal RNA

Nearby chains