IL_4WOI_259

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4WOI|1|CA|A|1938, 4WOI|1|CA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_259 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1506

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4WOI|1|CA|C|1934
4WOI|1|CA|G|1935
4WOI|1|CA|A|1936
4WOI|1|CA|A|1937
4WOI|1|CA|A|1938
4WOI|1|CA|U|1939
4WOI|1|CA|U|1940
4WOI|1|CA|C|1941
4WOI|1|CA|C|1942
4WOI|1|CA|U|1943
4WOI|1|CA|U|1944
4WOI|1|CA|G|1945
*
4WOI|1|CA|C|1961
4WOI|1|CA|C|1962
4WOI|1|CA|U|1963
4WOI|1|CA|G|1964

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA