IL_4WOI_303

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_303 not in the Motif Atlas

Homologous match to IL_4LFB_004

Geometric discrepancy: 0.2737

The information below is about IL_4LFB_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

4WOI|1|DA|C|54
4WOI|1|DA|A|55
4WOI|1|DA|U|56
*
4WOI|1|DA|A|356
4WOI|1|DA|G|357

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain DT

30S ribosomal protein S20