IL_4WOI_303
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAU*AG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WOI_303 not in the Motif Atlas
- Homologous match to IL_4LFB_004
- Geometric discrepancy: 0.2737
- The information below is about IL_4LFB_004
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
4WOI|1|DA|C|54
4WOI|1|DA|A|55
4WOI|1|DA|U|56
*
4WOI|1|DA|A|356
4WOI|1|DA|G|357
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain BH
- 50S ribosomal protein L9
- Chain DT
- 30S ribosomal protein S20
Coloring options: