IL_4WOI_310

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_310 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.1096

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4WOI|1|DA|G|128
4WOI|1|DA|A|129
4WOI|1|DA|A|130
4WOI|1|DA|A|131
*
4WOI|1|DA|U|231
4WOI|1|DA|G|232
4WOI|1|DA|C|233

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DP

30S ribosomal protein S16

Chain DQ

30S ribosomal protein S17

Chain DT

30S ribosomal protein S20