IL_4WOI_317

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_317 not in the Motif Atlas

Homologous match to IL_5J7L_016

Geometric discrepancy: 0.1999

The information below is about IL_5J7L_016

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4WOI|1|DA|G|292
4WOI|1|DA|G|293
*
4WOI|1|DA|U|304
4WOI|1|DA|G|305
4WOI|1|DA|A|306
4WOI|1|DA|C|307
4WOI|1|DA|C|308

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DL

30S ribosomal protein S12

Chain DP

30S ribosomal protein S16