IL_4WOI_323

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_323 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1334

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4WOI|1|DA|G|450
4WOI|1|DA|A|451
4WOI|1|DA|A|452
4WOI|1|DA|G|453
4WOI|1|DA|G|454
4WOI|1|DA|G|455
*
4WOI|1|DA|C|477
4WOI|1|DA|A|478
4WOI|1|DA|U|479
4WOI|1|DA|U|480
4WOI|1|DA|G|481
4WOI|1|DA|A|482
4WOI|1|DA|C|483

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain DP

30S ribosomal protein S16