IL_4WOI_329

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_329 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3411

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

4WOI|1|DA|G|597
4WOI|1|DA|U|598
4WOI|1|DA|C|599
*
4WOI|1|DA|G|639
4WOI|1|DA|A|640
4WOI|1|DA|U|641
4WOI|1|DA|A|642
4WOI|1|DA|C|643

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DH

30S ribosomal protein S8

Chain DQ

30S ribosomal protein S17