IL_4WOI_333
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 4WOI|1|DA|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WOI_333 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.0851
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4WOI|1|DA|U|662
4WOI|1|DA|A|663
4WOI|1|DA|G|664
4WOI|1|DA|A|665
4WOI|1|DA|G|666
*
4WOI|1|DA|U|740
4WOI|1|DA|G|741
4WOI|1|DA|G|742
4WOI|1|DA|A|743
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DF
- 30S ribosomal protein S6
- Chain DO
- 30S ribosomal protein S15
- Chain DR
- 30S ribosomal protein S18
- Chain DU
- 30S ribosomal protein S21
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